ncbi-entrez
Queries NCBI E-utilities for genomic data, enabling access to sequences, gene info, and variant data efficiently.
Install this skill
or
0/100
Security score
The ncbi-entrez skill was audited on May 23, 2026 and we found 35 security issues across 2 threat categories. Review the findings below before installing.
Categories Tested
Security Issues
medium line 27
Curl to non-GitHub URL
SourceSKILL.md
| 27 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=TP53[Gene]+AND+Homo+sapiens[Organism]&retmode=json" |
medium line 30
Curl to non-GitHub URL
SourceSKILL.md
| 30 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=clinvar&term=BRCA1[gene]+AND+pathogenic[clinical_significance]&retmode=json&retmax=20" |
medium line 33
Curl to non-GitHub URL
SourceSKILL.md
| 33 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide&term=SARS-CoV-2[Organism]+AND+complete+genome&retmode=json&retmax=5" |
medium line 39
Curl to non-GitHub URL
SourceSKILL.md
| 39 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=7157&retmode=xml" |
medium line 42
Curl to non-GitHub URL
SourceSKILL.md
| 42 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NM_000546.6&rettype=fasta&retmode=text" |
medium line 45
Curl to non-GitHub URL
SourceSKILL.md
| 45 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp&id=rs1042522&retmode=json" |
medium line 48
Curl to non-GitHub URL
SourceSKILL.md
| 48 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=clinvar&id=37653&rettype=clinvarset&retmode=xml" |
medium line 54
Curl to non-GitHub URL
SourceSKILL.md
| 54 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id=7157&retmode=json" |
medium line 57
Curl to non-GitHub URL
SourceSKILL.md
| 57 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=snp&id=rs1042522,rs28897696&retmode=json" |
medium line 63
Curl to non-GitHub URL
SourceSKILL.md
| 63 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=gene&db=snp&id=7157&retmode=json" |
medium line 66
Curl to non-GitHub URL
SourceSKILL.md
| 66 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=gene&db=clinvar&id=672&retmode=json" |
medium line 69
Curl to non-GitHub URL
SourceSKILL.md
| 69 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=gene&db=pubmed&id=7157&retmode=json" |
medium line 75
Curl to non-GitHub URL
SourceSKILL.md
| 75 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi?retmode=json" |
medium line 78
Curl to non-GitHub URL
SourceSKILL.md
| 78 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi?db=gene&retmode=json" |
medium line 98
Curl to non-GitHub URL
SourceSKILL.md
| 98 | IDS=$(curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=insulin[Gene]+AND+human[Organism]&retmode=json" | python3 -c "import sys,json; print(','.join(json.load(sys.stdin |
medium line 101
Curl to non-GitHub URL
SourceSKILL.md
| 101 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id=$IDS&retmode=json" |
medium line 104
Curl to non-GitHub URL
SourceSKILL.md
| 104 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=clinvar&term=BRCA1[gene]&datetype=pdat&mindate=2024/01/01&maxdate=2025/12/31&retmode=json" |
low line 14
External URL reference
SourceSKILL.md
| 14 | Base: `https://eutils.ncbi.nlm.nih.gov/entrez/eutils` |
low line 27
External URL reference
SourceSKILL.md
| 27 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=TP53[Gene]+AND+Homo+sapiens[Organism]&retmode=json" |
low line 30
External URL reference
SourceSKILL.md
| 30 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=clinvar&term=BRCA1[gene]+AND+pathogenic[clinical_significance]&retmode=json&retmax=20" |
low line 33
External URL reference
SourceSKILL.md
| 33 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide&term=SARS-CoV-2[Organism]+AND+complete+genome&retmode=json&retmax=5" |
low line 39
External URL reference
SourceSKILL.md
| 39 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=7157&retmode=xml" |
low line 42
External URL reference
SourceSKILL.md
| 42 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=NM_000546.6&rettype=fasta&retmode=text" |
low line 45
External URL reference
SourceSKILL.md
| 45 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp&id=rs1042522&retmode=json" |
low line 48
External URL reference
SourceSKILL.md
| 48 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=clinvar&id=37653&rettype=clinvarset&retmode=xml" |
low line 54
External URL reference
SourceSKILL.md
| 54 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id=7157&retmode=json" |
low line 57
External URL reference
SourceSKILL.md
| 57 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=snp&id=rs1042522,rs28897696&retmode=json" |
low line 63
External URL reference
SourceSKILL.md
| 63 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=gene&db=snp&id=7157&retmode=json" |
low line 66
External URL reference
SourceSKILL.md
| 66 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=gene&db=clinvar&id=672&retmode=json" |
low line 69
External URL reference
SourceSKILL.md
| 69 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=gene&db=pubmed&id=7157&retmode=json" |
low line 75
External URL reference
SourceSKILL.md
| 75 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi?retmode=json" |
low line 78
External URL reference
SourceSKILL.md
| 78 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi?db=gene&retmode=json" |
low line 98
External URL reference
SourceSKILL.md
| 98 | IDS=$(curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=insulin[Gene]+AND+human[Organism]&retmode=json" | python3 -c "import sys,json; print(','.join(json.load(sys.stdin |
low line 101
External URL reference
SourceSKILL.md
| 101 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gene&id=$IDS&retmode=json" |
low line 104
External URL reference
SourceSKILL.md
| 104 | curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=clinvar&term=BRCA1[gene]&datetype=pdat&mindate=2024/01/01&maxdate=2025/12/31&retmode=json" |
Scanned on May 23, 2026
View Security Dashboard