biothings-api

Enables querying of gene, variant, and drug annotations through BioThings APIs for biomedical research and analysis.

Install this skill

40/100

Security score

The biothings-api skill was audited on May 23, 2026 and we found 28 security issues across 2 threat categories. Review the findings below before installing.

Categories Tested

Security Issues

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Curl to non-GitHub URL

SourceSKILL.md

31	curl "https://mygene.info/v3/query?q=BRCA1&size=1"

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Curl to non-GitHub URL

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45	curl -s "https://mygene.info/v3/query?q=BRCA1&size=1"

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Curl to non-GitHub URL

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77	curl -s "https://mygene.info/v3/gene/1017"

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Curl to non-GitHub URL

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80	curl -s "https://mygene.info/v3/gene/1017?fields=symbol,name,summary,genomic_pos,go"

medium line 111

Curl to non-GitHub URL

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111	curl -s "https://myvariant.info/v1/query?q=rs58991260&size=1"

medium line 154

Curl to non-GitHub URL

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154	curl -s "https://myvariant.info/v1/variant/chr1:g.218631822G>A?fields=dbsnp,cadd,clinvar"

medium line 168

Curl to non-GitHub URL

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168	curl -s "https://mychem.info/v1/query?q=aspirin&size=1"

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Curl to non-GitHub URL

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210	curl -s "https://mychem.info/v1/chem/CHEMBL25?fields=drugbank,chembl,pubchem"

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External URL reference

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10	source: "https://biothings.io"

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External URL reference

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31	curl "https://mygene.info/v3/query?q=BRCA1&size=1"

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External URL reference

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39	GET https://mygene.info/v3/query?q={query}&size={n}

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External URL reference

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45	curl -s "https://mygene.info/v3/query?q=BRCA1&size=1"

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External URL reference

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70	GET https://mygene.info/v3/gene/{entrez_id}

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External URL reference

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77	curl -s "https://mygene.info/v3/gene/1017"

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External URL reference

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80	curl -s "https://mygene.info/v3/gene/1017?fields=symbol,name,summary,genomic_pos,go"

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External URL reference

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105	GET https://myvariant.info/v1/query?q={query}&size={n}

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External URL reference

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111	curl -s "https://myvariant.info/v1/query?q=rs58991260&size=1"

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External URL reference

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150	GET https://myvariant.info/v1/variant/{hgvs_id}

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External URL reference

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154	curl -s "https://myvariant.info/v1/variant/chr1:g.218631822G>A?fields=dbsnp,cadd,clinvar"

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External URL reference

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162	GET https://mychem.info/v1/query?q={query}&size={n}

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External URL reference

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168	curl -s "https://mychem.info/v1/query?q=aspirin&size=1"

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External URL reference

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206	GET https://mychem.info/v1/chem/{id}

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External URL reference

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210	curl -s "https://mychem.info/v1/chem/CHEMBL25?fields=drugbank,chembl,pubchem"

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External URL reference

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241	MYGENE = "https://mygene.info/v3"

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External URL reference

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242	MYVARIANT = "https://myvariant.info/v1"

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External URL reference

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243	MYCHEM = "https://mychem.info/v1"

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External URL reference

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292	- BioThings API Hub: https://biothings.io

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External URL reference

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296	- Publication: Xin J et al. Genome Biology 17:91 (2016). https://doi.org/10.1186/s13059-016-0953-9

Scanned on May 23, 2026

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Categorydata analytics

UpdatedJune 24, 2026

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