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bioqc-mcp

Automates sequencing quality control and visualization using FastQC and MultiQC, generating detailed reports and interactive charts.

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Security score

The bioqc-mcp skill was audited on Jun 6, 2026 and we found 2 security issues across 2 threat categories, including 1 high-severity. Review the findings below before installing.

Categories Tested

Security Issues

high line 189

Python subprocess execution

SourceSKILL.md
189- **No code execution**: All analysis is performed via explicit `subprocess.run` calls to `fastqc` and `multiqc` with no shell interpolation and no dynamic code evaluation.
low line 208

External URL reference

SourceSKILL.md
208- Andrews S. FastQC: A Quality Control Tool for High Throughput Sequence Data (2010). http://www.bioinformatics.babraham.ac.uk/projects/fastqc
Scanned on Jun 6, 2026
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