bio-basecalling
Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Note: Guppy is deprecated; use Dorado for all new analyses.
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The bio-basecalling skill was audited on May 13, 2026 and we found 1 security issue across 1 threat category. Review the findings below before installing.
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Security Issues
medium line 303
Template literal with variable interpolation in command context
SourceSKILL.md
| 303 | ```bash |
Scanned on May 13, 2026
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