bio-genome-intervals-coverage-analysis
Calculate read depth and coverage across genomic intervals using bedtools genomecov and coverage. Generate bedGraph files, compute per-base depth, and summarize coverage statistics. Use when assessing sequencing depth, creating coverage tracks, or evaluating target capture efficiency.
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The bio-genome-intervals-coverage-analysis skill was audited on May 13, 2026 and we found 1 security issue across 1 threat category. Review the findings below before installing.
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Security Issues
medium line 245
Python subprocess execution
SourceSKILL.md
| 245 | result = subprocess.run(['samtools', 'view', '-c', 'alignments.bam'], |
Scanned on May 13, 2026
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