macs3-peak-calling
MACS3 identifies enriched regions in ChIP-seq/ATAC-seq data, producing peak files for motif analysis and differential binding studies.
Install this skill
or
88/100
Security score
The macs3-peak-calling skill was audited on May 24, 2026 and we found 4 security issues across 2 threat categories. Review the findings below before installing.
Categories Tested
Security Issues
medium line 242
Template literal with variable interpolation in command context
SourceSKILL.md
| 242 | ```bash |
medium line 281
Template literal with variable interpolation in command context
SourceSKILL.md
| 281 | ```bash |
low line 333
External URL reference
SourceSKILL.md
| 333 | - Zhang Y et al. (2008) "Model-based Analysis of ChIP-Seq (MACS)" — *Genome Biology* 9:R137. [DOI:10.1186/gb-2008-9-9-r137](https://doi.org/10.1186/gb-2008-9-9-r137) |
low line 334
External URL reference
SourceSKILL.md
| 334 | - [ENCODE ATAC-seq pipeline](https://www.encodeproject.org/atac-seq/) — ENCODE standardized ATAC-seq workflow using MACS3 |
Scanned on May 24, 2026
View Security DashboardGitHub Stars 199
Rate this skill
Categoryeducation research
UpdatedJune 15, 2026
jaechang-hits/SciAgent-Skills