plannotate-plasmid-annotation
Automates plasmid annotation by identifying features through BLAST searches, generating GenBank files, HTML maps, and CSV tables.
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The plannotate-plasmid-annotation skill was audited on May 24, 2026 and we found 4 security issues across 2 threat categories. Review the findings below before installing.
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Security Issues
medium line 331
Template literal with variable interpolation in command context
SourceSKILL.md
| 331 | ```bash |
low line 436
External URL reference
SourceSKILL.md
| 436 | - [McGuffi M et al. (2021) Nucleic Acids Research 49(W1): W516–W522](https://doi.org/10.1093/nar/gkab374) — original pLannotate paper describing the BLAST-based annotation pipeline and curated feature |
low line 438
External URL reference
SourceSKILL.md
| 438 | - [Addgene plasmid repository](https://www.addgene.org/) — primary source for the curated feature library used by pLannotate |
low line 439
External URL reference
SourceSKILL.md
| 439 | - [BioPython SeqIO documentation](https://biopython.org/wiki/SeqIO) — parsing and manipulating GenBank output files |
Scanned on May 24, 2026
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Categoryeducation research
UpdatedJune 15, 2026
jaechang-hits/SciAgent-Skills