scanpy
Scanpy is a Python toolkit for analyzing single-cell RNA-seq data, enabling workflows from quality control to visualization.
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The scanpy skill was audited on May 21, 2026 and we found 3 security issues across 1 threat category. Review the findings below before installing.
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External URL reference
SourceSKILL.md
| 372 | - **Official scanpy documentation**: https://scanpy.readthedocs.io/ |
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External URL reference
SourceSKILL.md
| 373 | - **Scanpy tutorials**: https://scanpy-tutorials.readthedocs.io/ |
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External URL reference
SourceSKILL.md
| 374 | - **scverse ecosystem**: https://scverse.org/ (related tools: squidpy, scvi-tools, cellrank) |
Scanned on May 21, 2026
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Categorydata analytics
UpdatedJune 10, 2026
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