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scanpy

Scanpy is a Python toolkit for analyzing single-cell RNA-seq data, enabling workflows from quality control to visualization.

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Security score

The scanpy skill was audited on May 21, 2026 and we found 3 security issues across 1 threat category. Review the findings below before installing.

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Security Issues

low line 372

External URL reference

SourceSKILL.md
372- **Official scanpy documentation**: https://scanpy.readthedocs.io/
low line 373

External URL reference

SourceSKILL.md
373- **Scanpy tutorials**: https://scanpy-tutorials.readthedocs.io/
low line 374

External URL reference

SourceSKILL.md
374- **scverse ecosystem**: https://scverse.org/ (related tools: squidpy, scvi-tools, cellrank)
Scanned on May 21, 2026
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