genomics-analysis-guide
Provides workflows for RNA-seq, GWAS, and variant calling, enabling reproducible genomic data analysis in research.
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The genomics-analysis-guide skill was audited on May 23, 2026 and we found 5 security issues across 1 threat category. Review the findings below before installing.
Categories Tested
Security Issues
low line 266
External URL reference
SourceSKILL.md
| 266 | - [DESeq2 Vignette](https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html) -- Differential expression analysis |
low line 267
External URL reference
SourceSKILL.md
| 267 | - [GATK Best Practices](https://gatk.broadinstitute.org/hc/en-us/sections/360007226651-Best-Practices-Workflows) -- Variant calling |
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External URL reference
SourceSKILL.md
| 268 | - [PLINK2 Documentation](https://www.cog-genomics.org/plink/2.0/) -- Genetic association analysis |
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External URL reference
SourceSKILL.md
| 269 | - [nf-core Pipelines](https://nf-co.re/) -- Community Nextflow workflows |
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External URL reference
SourceSKILL.md
| 270 | - [RNA-seq Analysis Tutorial](https://rnabio.org/) -- Griffith Lab comprehensive tutorial |
Scanned on May 23, 2026
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Categoryeducation research
UpdatedJune 24, 2026
openclawapitestingresearcherdata-scientistbi-analystml-ai-engineerproduct-managereducation researchdata analyticsdevelopmentproduct
brycewang-stanford/Awesome-Agent-Skills-for-Empirical-Research