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scanpy

Facilitates comprehensive single-cell RNA-seq analysis, including data loading, quality control, clustering, and visualization.

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Security score

The scanpy skill was audited on Feb 28, 2026 and we found 3 security issues across 1 threat category. Review the findings below before installing.

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Security Issues

low line 367

External URL reference

SourceSKILL.md
367- **Official scanpy documentation**: https://scanpy.readthedocs.io/
low line 368

External URL reference

SourceSKILL.md
368- **Scanpy tutorials**: https://scanpy-tutorials.readthedocs.io/
low line 369

External URL reference

SourceSKILL.md
369- **scverse ecosystem**: https://scverse.org/ (related tools: squidpy, scvi-tools, cellrank)
Scanned on Feb 28, 2026
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