scanpy
Facilitates comprehensive single-cell RNA-seq analysis, including data loading, quality control, clustering, and visualization.
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The scanpy skill was audited on Feb 28, 2026 and we found 3 security issues across 1 threat category. Review the findings below before installing.
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External URL reference
SourceSKILL.md
| 367 | - **Official scanpy documentation**: https://scanpy.readthedocs.io/ |
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External URL reference
SourceSKILL.md
| 368 | - **Scanpy tutorials**: https://scanpy-tutorials.readthedocs.io/ |
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External URL reference
SourceSKILL.md
| 369 | - **scverse ecosystem**: https://scverse.org/ (related tools: squidpy, scvi-tools, cellrank) |
Scanned on Feb 28, 2026
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Categorydata analytics
UpdatedMay 13, 2026
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