bio-clinical-databases-pharmacogenomics
Queries PharmGKB and CPIC for pharmacogenomic data to predict drug responses based on genetic variants.
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The bio-clinical-databases-pharmacogenomics skill was audited on Jun 6, 2026 and we found 8 security issues across 1 threat category. Review the findings below before installing.
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Security Issues
low line 16
External URL reference
SourceSKILL.md
| 16 | If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. PharmVar is the authoritative star-allele |
low line 27
External URL reference
SourceSKILL.md
| 27 | - API: `requests.get('https://api.pharmgkb.org/v1/data/clinicalAnnotation', ...)` |
low line 63
External URL reference
SourceSKILL.md
| 63 | PharmVar (`https://www.pharmvar.org`) is authoritative for: CYP1A1, CYP1A2, CYP1B1, CYP2A6, CYP2A13, CYP2B6, CYP2C8, CYP2C9, CYP2C19, CYP2D6, CYP2E1, CYP2F1, CYP2J2, CYP2R1, CYP2S1, CYP2W1, CYP3A4, CY |
low line 346
External URL reference
SourceSKILL.md
| 346 | PHARMGKB = 'https://api.pharmgkb.org/v1' |
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External URL reference
SourceSKILL.md
| 485 | - PharmCAT documentation: `https://pharmcat.org` |
low line 486
External URL reference
SourceSKILL.md
| 486 | - PharmVar: `https://www.pharmvar.org` |
low line 487
External URL reference
SourceSKILL.md
| 487 | - CPIC: `https://cpicpgx.org` |
low line 488
External URL reference
SourceSKILL.md
| 488 | - DPWG: `https://www.knmp.nl/dpwg` |
Scanned on Jun 6, 2026
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Categoryhealthcare
UpdatedJune 10, 2026
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GPTomics/bioSkills