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pride-database

Enables users to search and download proteomics datasets from the PRIDE Archive v3 REST API, facilitating data analysis and research.

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Security score

The pride-database skill was audited on May 24, 2026 and we found 22 security issues across 1 threat category. Review the findings below before installing.

Categories Tested

Security Issues

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External URL reference

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11The PRIDE Archive (ProteomicsIDEntifications database) at EMBL-EBI is the world's largest public mass-spectrometry proteomics repository — 39,000+ projects and 3.4M+ deposited files as of 2026. Progra
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41PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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75PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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137PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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166PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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195PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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257PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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283PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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311PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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335PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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404PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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450PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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491PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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555PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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580PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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600PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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622PRIDE = "https://www.ebi.ac.uk/pride/ws/archive/v3"
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654- [PRIDE Archive v3 REST API root](https://www.ebi.ac.uk/pride/ws/archive/v3/) — base URL
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655- [PRIDE v3 OpenAPI/Swagger spec](https://www.ebi.ac.uk/pride/ws/archive/v3/v3/api-docs) — authoritative endpoint inventory
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656- [PRIDE Archive web portal](https://www.ebi.ac.uk/pride/) — interactive dataset browser
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657- [Perez-Riverol et al., *Nucleic Acids Research* 2022](https://doi.org/10.1093/nar/gkab1038) — PRIDE 2022 update describing repository and architecture
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658- [ProteomeXchange Consortium](http://www.proteomexchange.org/) — standard accession system shared across PRIDE, MassIVE, jPOST, iProX
Scanned on May 24, 2026
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Categorydata analytics
UpdatedJune 15, 2026
openclawclaude-codecursorwindsurfclineroo-codeampcodexgoosetraeopencodeaidergemini-clicopilotgithub-copilotapidatabasecross-platformdata-analystresearcherdata-scientistdata analyticseducation research
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