viennarna-structure-prediction
Predicts RNA secondary structures and interactions using ViennaRNA Python bindings for various RNA applications.
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The viennarna-structure-prediction skill was audited on May 24, 2026 and we found 4 security issues across 2 threat categories. Review the findings below before installing.
Categories Tested
Security Issues
medium line 319
Python subprocess execution
SourceSKILL.md
| 319 | result = subprocess.run( |
low line 545
External URL reference
SourceSKILL.md
| 545 | - [ViennaRNA documentation](https://www.tbi.univie.ac.at/RNA/) — official documentation, parameter files, and Python API reference |
low line 546
External URL reference
SourceSKILL.md
| 546 | - [Lorenz et al., Algorithms Mol Biol 2011](https://doi.org/10.1186/1748-7188-6-26) — ViennaRNA Package 2.0 paper (primary citation for structure prediction) |
low line 547
External URL reference
SourceSKILL.md
| 547 | - [Turner & Mathews, Nucleic Acids Res 2010](https://doi.org/10.1093/nar/gkp892) — Nearest-neighbor thermodynamic parameters used by ViennaRNA |
Scanned on May 24, 2026
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Categoryeducation research
UpdatedJune 15, 2026
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