TF-differential-binding
Facilitates differential transcription factor binding analysis using ChIP-seq data with the DiffBind package in R.
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The TF-differential-binding skill was audited on Feb 9, 2026 and we found 6 security issues across 1 threat category, including 4 high-severity. Review the findings below before installing.
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high line 14
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SourceSKILL.md
| 14 | - Refer to the **Inputs & Outputs** section to check inputs and build the output architecture. All the output file should located in `${proj_dir}` in Step 0. |
medium line 46
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| 46 | ```bash |
high line 79
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| 79 | - Create `${sample}_TF_DB` directory. |
high line 80
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| 80 | - Return the full path of the `${sample}_TF_DB` directory, which will be used as `${proj_dir}`. |
medium line 185
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| 185 | ```r |
high line 199
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| 199 | Output: `DB_results.csv` `DB_up_${treated_condition}.bed` `DB_down_${treated_condition}.bed` |
Scanned on Feb 9, 2026
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Categorydata analytics
UpdatedMay 21, 2026
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