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TF-differential-binding

Facilitates differential transcription factor binding analysis using ChIP-seq data with the DiffBind package in R.

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Security score

The TF-differential-binding skill was audited on Feb 9, 2026 and we found 6 security issues across 1 threat category, including 4 high-severity. Review the findings below before installing.

Categories Tested

Security Issues

high line 14

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SourceSKILL.md
14- Refer to the **Inputs & Outputs** section to check inputs and build the output architecture. All the output file should located in `${proj_dir}` in Step 0.
medium line 46

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SourceSKILL.md
46```bash
high line 79

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SourceSKILL.md
79- Create `${sample}_TF_DB` directory.
high line 80

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SourceSKILL.md
80- Return the full path of the `${sample}_TF_DB` directory, which will be used as `${proj_dir}`.
medium line 185

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SourceSKILL.md
185```r
high line 199

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199Output: `DB_results.csv` `DB_up_${treated_condition}.bed` `DB_down_${treated_condition}.bed`
Scanned on Feb 9, 2026
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