bio-alignment-sorting

Sorts alignment files using samtools and pysam for efficient BAM file preparation in bioinformatics workflows.

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Security score

The bio-alignment-sorting skill was audited on Feb 9, 2026 and we found 2 security issues across 1 threat category. Review the findings below before installing.

Categories Tested

Security Issues

medium line 147

Python subprocess execution

SourceSKILL.md

147	subprocess.run(

medium line 161

Python subprocess execution

SourceSKILL.md

161	aligner = subprocess.Popen(['bwa', 'mem', 'ref.fa', 'reads.fq'],

Scanned on Feb 9, 2026

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GitHub Stars 106

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Categorydata analytics

UpdatedMay 21, 2026

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