gwas-database
Queries the NHGRI-EBI GWAS Catalog for SNP-trait associations, aiding in genetic epidemiology and polygenic risk score analysis.
Install this skill
Security score
The gwas-database skill was audited on May 13, 2026 and we found 28 security issues across 1 threat category. Review the findings below before installing.
Categories Tested
Security Issues
External URL reference
| 55 | The web interface at <https://www.ebi.ac.uk/gwas/> supports multiple search modes: |
External URL reference
| 108 | - GWAS Catalog API: `https://www.ebi.ac.uk/gwas/rest/api` |
External URL reference
| 109 | - Summary Statistics API: `https://www.ebi.ac.uk/gwas/summary-statistics/api` |
External URL reference
| 113 | - Main API docs: <https://www.ebi.ac.uk/gwas/rest/docs/api> |
External URL reference
| 114 | - Summary stats docs: <https://www.ebi.ac.uk/gwas/summary-statistics/docs/> |
External URL reference
| 124 | url = "https://www.ebi.ac.uk/gwas/rest/api/studies/GCST001795" |
External URL reference
| 134 | url = f"https://www.ebi.ac.uk/gwas/rest/api/singleNucleotidePolymorphisms/{variant}/associations" |
External URL reference
| 144 | url = "https://www.ebi.ac.uk/gwas/rest/api/singleNucleotidePolymorphisms/rs7903146" |
External URL reference
| 153 | url = "https://www.ebi.ac.uk/gwas/rest/api/efoTraits/EFO_0001360" |
External URL reference
| 166 | base_url = "https://www.ebi.ac.uk/gwas/rest/api" |
External URL reference
| 187 | base_url = "https://www.ebi.ac.uk/gwas/rest/api" |
External URL reference
| 213 | base_url = "https://www.ebi.ac.uk/gwas/summary-statistics/api" |
External URL reference
| 245 | base_url = "https://www.ebi.ac.uk/gwas/rest/api" |
External URL reference
| 262 | 1. **FTP download**: <http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/> |
External URL reference
| 280 | base_url = "https://www.ebi.ac.uk/gwas/summary-statistics/api" |
External URL reference
| 318 | response = requests.get("https://www.ebi.ac.uk/gwas/rest/api/studies/GCST001234") |
External URL reference
| 337 | url = f"https://www.ebi.ac.uk/gwas/rest/api/efoTraits/{efo_id}/associations" |
External URL reference
| 361 | url = f"https://www.ebi.ac.uk/gwas/rest/api/singleNucleotidePolymorphisms/{rs_id}" |
External URL reference
| 367 | url = f"https://www.ebi.ac.uk/gwas/rest/api/singleNucleotidePolymorphisms/{rs_id}/associations" |
External URL reference
| 385 | url = f"https://www.ebi.ac.uk/gwas/rest/api/singleNucleotidePolymorphisms/search/findByGene" |
External URL reference
| 451 | url = f"https://www.ebi.ac.uk/gwas/summary-statistics/api/chromosomes/{chrom}/associations" |
External URL reference
| 545 | base_url = "https://www.ebi.ac.uk/gwas/rest/api" |
External URL reference
| 652 | - **GWAS Catalog website**: <https://www.ebi.ac.uk/gwas/> |
External URL reference
| 653 | - **Documentation**: <https://www.ebi.ac.uk/gwas/docs> |
External URL reference
| 654 | - **API documentation**: <https://www.ebi.ac.uk/gwas/rest/docs/api> |
External URL reference
| 655 | - **Summary Statistics API**: <https://www.ebi.ac.uk/gwas/summary-statistics/docs/> |
External URL reference
| 656 | - **FTP site**: <http://ftp.ebi.ac.uk/pub/databases/gwas/> |
External URL reference
| 658 | - **PGS Catalog** (polygenic scores): <https://www.pgscatalog.org/> |