gwas-catalog-region-fetch

Fetches GWAS summary statistics for variants in a specified chromosomal region from the NHGRI-EBI GWAS Catalog.

Install this skill

96/100

Security score

The gwas-catalog-region-fetch skill was audited on Jun 11, 2026 and we found 4 security issues across 1 threat category. Review the findings below before installing.

Categories Tested

Security Issues

low line 53

External URL reference

SourceSKILL.md

53	- https://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/ # tabix-on-FTP harmonised

low line 81

External URL reference

SourceSKILL.md

81	The NHGRI-EBI GWAS Catalog (Sollis 2023 NAR) maintains harmonised summary statistics for ~25,000 published GWAS at `https://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/<GCST>/harmonised/<GCS

low line 108

External URL reference

SourceSKILL.md

108	1. Resolve `accession`: the canonical `GCST########` identifier. Look up via the GWAS Catalog REST API (`https://www.ebi.ac.uk/gwas/rest/api/studies/<GCST>`) or the web UI at `https://www.ebi.ac.u

low line 172

External URL reference

SourceSKILL.md

172	source_url: https://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90269602/harmonised/GCST90269602.h.tsv.gz

Scanned on Jun 11, 2026

View Security Dashboard

Installation guide →

GitHub Stars 48

Rate this skill

Categorydata analytics

UpdatedJune 13, 2026

openclaw api database data-analyst bi-analyst researcher ml-ai-engineer product-manager data analytics education research development product

BioTender-max/awesome-bio-agent-skills