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reactome-database

Facilitates pathway analysis and gene mapping using the Reactome REST API for systems biology research.

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Security score

The reactome-database skill was audited on Feb 28, 2026 and we found 15 security issues across 1 threat category. Review the findings below before installing.

Categories Tested

Security Issues

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38**API Base URL:** `https://reactome.org/ContentService`
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49**API Base URL:** `https://reactome.org/AnalysisService`
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72response = requests.get("https://reactome.org/ContentService/data/database/version")
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82response = requests.get(f"https://reactome.org/ContentService/data/query/{entity_id}")
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92f"https://reactome.org/ContentService/data/event/{event_id}/participatingPhysicalEntities"
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128"https://reactome.org/AnalysisService/identifiers/",
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144response = requests.get(f"https://reactome.org/AnalysisService/token/{token}")
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169"https://reactome.org/AnalysisService/identifiers/",
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183"https://reactome.org/AnalysisService/identifiers/projection/",
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196url = f"https://reactome.org/PathwayBrowser/#{pathway_id}&DTAB=AN&ANALYSIS={token}"
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257- **API Documentation**: https://reactome.org/dev
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258- **User Guide**: https://reactome.org/userguide
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259- **Documentation Portal**: https://reactome.org/documentation
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260- **Data Downloads**: https://reactome.org/download-data
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261- **reactome2py Docs**: https://reactome.github.io/reactome2py/
Scanned on Feb 28, 2026
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