uniprot-database
Provides direct REST API access to UniProt for protein searches, FASTA retrieval, and ID mapping, enhancing bioinformatics workflows.
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The uniprot-database skill was audited on Feb 28, 2026 and we found 13 security issues across 1 threat category. Review the findings below before installing.
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Security Issues
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| 51 | Use the API search endpoint: `https://rest.uniprot.org/uniprotkb/search?query={query}&format={format}` |
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| 63 | **Retrieve endpoint:** `https://rest.uniprot.org/uniprotkb/{accession}.{format}` |
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| 65 | Example: `https://rest.uniprot.org/uniprotkb/P12345.fasta` |
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| 72 | 1. Submit mapping job to: `https://rest.uniprot.org/idmapping/run` |
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| 73 | 2. Check job status: `https://rest.uniprot.org/idmapping/status/{jobId}` |
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| 74 | 3. Retrieve results: `https://rest.uniprot.org/idmapping/results/{jobId}` |
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| 92 | `https://rest.uniprot.org/uniprotkb/stream?query={query}&format={format}` |
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| 112 | **Example:** `https://rest.uniprot.org/uniprotkb/search?query=insulin&fields=accession,gene_names,organism_name,length,sequence&format=tsv` |
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| 185 | - **API Documentation**: https://www.uniprot.org/help/api |
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| 186 | - **Interactive API Explorer**: https://www.uniprot.org/api-documentation |
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| 187 | - **REST Tutorial**: https://www.uniprot.org/help/uniprot_rest_tutorial |
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| 188 | - **Query Syntax Help**: https://www.uniprot.org/help/query-fields |
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| 189 | - **SPARQL Endpoint**: https://sparql.uniprot.org/ (for advanced graph queries) |
Scanned on Feb 28, 2026
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Categorydata analytics
UpdatedMay 13, 2026
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